rs46152162 SNP Detail

Summary

• ID
  rs46152162
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:92090733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTG ATAGACTTAA AAGCTCAAAG
  W
  CTTTGAACTC AAGGGAAAAT GAGCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145570256	ENSMUSSNP6682442	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
ss322791515	CHEV_8_93888004	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46152162					SNP	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:92090733 () rs orientation: forward

Symbol	Name	Function Class
B130011D17Rik	RIKEN cDNA B130011D17 gene	1564 bp upstream
Fto	FTO alpha-ketoglutarate dependent dioxygenase	within coordinates
Rr178622	regulatory region 178622	533 bp distal
Rr191072	regulatory region 191072	within coordinates
Tssr78731	transcription start site region 78731	839 bp downstream