rs46152400 SNP Detail

Summary

• ID
  rs46152400
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55253210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGAAAGGG TGGGCTTTGC
  GAAGATGGCG GCTCCGGTGA GTTCTGTCTC CTTGCTTCTT CCCGGAAAGG AAGGAATCTG
  TGAAAGTTTC CTTTCGCCTC CACGGATCGA GGCAAACCGT TGGCACCATG GATGATGAGA
  GTGATGAGAG TTGTCTCAGG GATGCGCTCA CTCTGACACA GCGGTATCGT ATGTCAGATG
  R
  GAGGGAGGGT CAGACGCTGC AGGTTGGCTG GTTCCGGACA GGAGGCTAAC CCCAAATTAC
  TCTTCAGAAT GAGCTTTGTA GGGAGAGTCT CGTGACCATG GCGGGCGGTG ACCCGGCCTT
  AAGGTGGGAC AATGTTCCGA GCAGAGCTAG CGTCACATGT ACAATGTGGC TGGGGCAAAG
  GCAGCCGTAA AGTTTGGCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss139575838	ENSMUSSNP1351566	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss324641579	CHEV_14_55634590	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46152400					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55253210 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	within coordinates
Gm63347	predicted gene, 63347	within coordinates
Ngdn	neuroguidin, EIF4E binding protein	within coordinates
Rr369830	regulatory region 369830	559 bp downstream
Rr369831	regulatory region 369831	130 bp downstream
Rr404108	regulatory region 404108	1331 bp downstream
Rr492392	regulatory region 492392	289 bp distal
Rr492393	regulatory region 492393	586 bp distal
Rr492394	regulatory region 492394	within coordinates
Rr492395	regulatory region 492395	38 bp proximal
Rr492396	regulatory region 492396	405 bp proximal
Tssr125743	transcription start site region 125743	182 bp downstream