rs46152575 SNP Detail

Summary

• ID
  rs46152575
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140427560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGTTCCTGG AGACTCGTGT GGTTGCTGGA GATGTGCATA
  GCCCCTAAAG GAGAAGTCCA CGGAGAGGAT GGGGGCTCCC TGGAGAGGGT TAGTTCCCCC
  M
  AAAAACAGGA TCTCTGGAAA AGGTAATGTC TGAAGAGAGG CCTTGGGCCA GAGGTCATTG
  TCTCCATCAC ACACACTATG ATCTAGAACT TCTTGTGGGA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61072226	NES16047754	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46152575					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61072226	NES16047754	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140427560 () rs orientation: forward

Symbol	Name	Function Class
C330022C24Rik	RIKEN cDNA C330022C24 gene	1958 bp upstream
Cimap1a	ciliary microtubule associated protein 1A	269 bp upstream
Gm45785	predicted gene 45785	within coordinates
Rr657757	regulatory region 657757	1868 bp distal
Rr657758	regulatory region 657758	1694 bp distal
Rr657759	regulatory region 657759	268 bp proximal
Rr657760	regulatory region 657760	1732 bp proximal
Scgb1c1	secretoglobin, family 1C, member 1	878 bp downstream
Tssr69848	transcription start site region 69848	107 bp upstream
Tssr69849	transcription start site region 69849	123 bp upstream
Tssr69850	transcription start site region 69850	137 bp upstream
Tssr69851	transcription start site region 69851	154 bp upstream
Tssr69852	transcription start site region 69852	169 bp upstream
Tssr69853	transcription start site region 69853	196 bp upstream