rs46152585 SNP Detail

Summary

• ID
  rs46152585
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116352839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAATAAA ATAAAGGGGA
  AAAAAAGAAA TTTAGCCCTG AGTCTAAGGT AATTAAGATG AAATTTAAAT GTATTGAATT
  TTATCAGGAG ACATTAAATG GCTGATAATA AAGAGCAAAA CTCACTTGTC ACACACACAC
  ACAAAAAAAA ATACCCTCAC TGTATCATTT CTCATACAGT TTGTGCATAT TACAAATGAT
  M
  ATAAAAGCCG GGCCTGTAGG CTTGCACCCA CGGTCCTAGC TGGGTAGAAG GCGGAGGGAG
  ACGAATCTTT TTTGAGCTCT AGAACTTCAG ATCAACCAGA GCAATGCAGA AAGACTGTCA
  CCTGAAAAAT CAAATCAAAT CAAATCAAAT CAAATCAAAT CAAATCAAAT CAAATCAAAT
  CAAATCGGGT CTGGAGAGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60436924	NES15941868	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46152585					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60436924	NES15941868	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116352839 () rs orientation: forward

Symbol	Name	Function Class
Gm9761	predicted gene 9761	1745 bp downstream
Gm65478	predicted gene, 65478	within coordinates