rs46153174 SNP Detail

Summary

• ID
  rs46153174
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:10993496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTTCATC TCTAAAGGTA
  TTCACAAGAA TTGATTGAGA AACCATCCAG GAACTCCCAC TGAAAGCCAC CTGCTCTCAC
  AAGCCAGATG TCAGTGTTGT AAACCTGGTT GAGTTGTAAA TACTGCCTGA TTATGGCTGA
  TTTGGTCTGA TCAGAGATGC CTGCAGCAAG CACAATGGCA TCAGATAAGG CCTGTGGGAA
  Y
  GTATTTGAAG GTGACTGTGC CTTGCAAGTT TACATTTCAT AGCCAGGCAC AATTTACCAC
  ATCGCTGTCA AACCAATTTG CACATTCAAA TAAATTAAAT TTGAAGTATG AAGCAGAAAT
  CAGAAAGGAC CCACCATGTG ATCCCACTAA CCAGAGATGC TTAAGAGGGA GGAAATAGGG
  GTTTAAAATA TTGCATCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61741547	NES17678339	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	T	T	T	C		C	C	T	C		T
ss324260911	CHEV_13_10942706	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46153174					SNP	T	C	T	C	T	T	T	T	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61741547	NES17678339	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:10993496 () rs orientation: forward

Symbol	Name	Function Class
Rr270346	regulatory region 270346	896 bp distal
Rr278201	regulatory region 278201	1029 bp distal