rs46153941 SNP Detail

Summary

• ID
  rs46153941
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106104648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTTATAG AGCCAAATGT
  ATGTTTCTCC AGGTTAGCTC TGTTTCGATT GAATTTAGGG CAGGTGGCTC GCATGTCTCC
  AGCTAATTTT TGAGCTATTA TTTTCCATAT GGTGGCAGAG ATAGCAGGAG TGAGCTTGCG
  CCATAGGAAG TCAACAAAGG ATGTGATTGC GGTGGCACCT TGGCAGGAGA TCTTAAAACT
  C
  ATAAAAAAAT GGTCTTTCTT TCTCTCCAGA TAGTTCACAG GGTCATTTGC AGTCTTGAAT
  GCCTCGTGCA TTTTCTTGAA ATCCTTGGAT GCTCTTTGGA ATAAGTACAA GGATAAGTCA
  ATGATGTAGT CTCTGGTAAA TGTGTAGTCT CCCTCACAGG GTTCAGATTT CAGCTCATTT
  TCTATGATCT TCAAGATTTC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145614791	ENSMUSSNP6226986	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46153941					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106104648 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr68401	transcription start site region 68401	1803 bp downstream
Tssr74117	transcription start site region 74117	1915 bp upstream
Tssr74118	transcription start site region 74118	1868 bp upstream
Tssr74119	transcription start site region 74119	1470 bp upstream
Tssr74120	transcription start site region 74120	1453 bp upstream
Tssr74121	transcription start site region 74121	1390 bp upstream
Tssr74122	transcription start site region 74122	1373 bp upstream
Tssr74123	transcription start site region 74123	1340 bp upstream
Tssr74124	transcription start site region 74124	1295 bp upstream
Tssr74125	transcription start site region 74125	1284 bp upstream
Tssr74126	transcription start site region 74126	1248 bp upstream
Tssr74127	transcription start site region 74127	1097 bp upstream
Tssr74128	transcription start site region 74128	1017 bp upstream
Tssr74129	transcription start site region 74129	486 bp upstream
Tssr74130	transcription start site region 74130	437 bp upstream
Tssr74131	transcription start site region 74131	226 bp upstream
Tssr74132	transcription start site region 74132	50 bp upstream
Tssr74133	transcription start site region 74133	599 bp downstream
Tssr74134	transcription start site region 74134	826 bp downstream
Tssr74135	transcription start site region 74135	909 bp downstream
Tssr74136	transcription start site region 74136	977 bp downstream
Tssr74137	transcription start site region 74137	1043 bp downstream
Tssr74138	transcription start site region 74138	1073 bp downstream
Tssr74139	transcription start site region 74139	1107 bp downstream
Tssr74140	transcription start site region 74140	1162 bp downstream
Tssr74141	transcription start site region 74141	1562 bp downstream
Tssr74142	transcription start site region 74142	1705 bp downstream