rs46154293 SNP Detail

Summary

• ID
  rs46154293
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:71957337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACGCCAGGG GAGTGTGATT GGTGCAATTC TGAGCTCTGA
  ACTCAGAAAG CCCTAGAATC AAATCCTGGC CCAACAACTA ACTGTACCTA GGCAGATCAC
  M
  CAGGGATTAG ACAGCAACCT TCCCTCTAAT AAATCTCAAT TTAAATATAA CTAGCTCATA
  GGGTCTGAGA AATTCTAAAG CTAGTACCCA GCCTCTGGTC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
ss61019288	NES16107378	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	A	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
rs46154293					SNP	C	C	A	C	A	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61019288	NES16107378	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:71957337 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19258	CpG island 19258	635 bp distal
Gm39035	predicted gene, 39035	within coordinates
Mctp2	multiple C2 domains, transmembrane 2	981 bp upstream
Rr165673	regulatory region 165673	455 bp proximal
Rr167990	regulatory region 167990	336 bp distal
Tssr67176	transcription start site region 67176	675 bp downstream
Tssr72929	transcription start site region 72929	942 bp upstream
Tssr72930	transcription start site region 72930	834 bp upstream