rs46154816 SNP Detail

Summary

• ID
  rs46154816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20886204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAAAGATT AGTGGAGAGG
  AAGGCTGAAG GAGTCTGGTG ACTCCCCTCT ACTCCCTCCC AGTTCCACAG AGCTCCCTCA
  TCCCTCAAAA GCTTTGGTTG CTTGTGGTAG CCCCTTATGC ATGTCTGCTG CCCACCAAAC
  TTGCAAGGGA GAACTGCCGG AGAGCTCAGA ACTTTTATCC TCACCTCCCA TCGCCACAAT
  Y
  TCTATGGCTC CCTAGGGCCC AGGCATACAC TAACCTCCCA AGGCCCATTT GAGGTCGAAA
  CCTGCTGTAG TTGCCTCTGG TATATCCTAC AGACCCCCTC CCCACCCCCA CACAAACACT
  TTTTCCGGCA GACTATCTTA TCTTTGGATT TCATTCGACT GTCACTGTCT AGGCCTTCAG
  GAACTATCTT CTCTTTTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61357549	NES16731721	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46154816					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61357549	NES16731721	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20886204 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21408	CpG island 21408	493 bp proximal
Rr206018	regulatory region 206018	within coordinates
S1pr2	sphingosine-1-phosphate receptor 2	within coordinates
Tssr83936	transcription start site region 83936	1934 bp downstream
Tssr83937	transcription start site region 83937	1004 bp upstream
Tssr88347	transcription start site region 88347	1763 bp downstream
Tssr88348	transcription start site region 88348	1813 bp downstream
Tssr88349	transcription start site region 88349	1854 bp downstream