rs46154820 SNP Detail

Summary

• ID
  rs46154820
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85415746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTTATTTA ATCTTTGCCC
  TTGACAGCTA AGATTCCTAT TTAACAGGTA AGGGAAATAG GAGCCTTACA TTTTAATTAA
  CTTGCCCAGA GTACGTGGTG GGACTGAGAT TCAAAGACAG TGAATACTAT TCTAGAGCCT
  GAGTTAACCT ACAAGGTGCA CACAGAAGAC ATCTAAAGGT GCAGAGTGCC TCCGCTTTTT
  R
  CCCTGAATTA AACTAGTGAA ACTCCCTTGT AGAAGAGTTG TATTATTAAG AATCACTGGT
  GTAGTGTAGC CTGCGCACTT CCTTCCCTAG AAGAGTCTTG ACCCTGGTCG CCCACTGTAG
  GTAATGTCTC TAATTGGTCA GTTATTGTCA TGTGATTGGC CCGCCCTCTT TGCCAACATG
  GCGGCTCCCA GGCCCTAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60644224	NES16269465	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46154820					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60644224	NES16269465	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85415746 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20705	CpG island 20705	1081 bp distal
Cpgi20706	CpG island 20706	364 bp proximal
Nacc1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	1218 bp upstream
Rr666573	regulatory region 666573	1226 bp distal
Rr666574	regulatory region 666574	1854 bp distal
Rr666575	regulatory region 666575	882 bp distal
Rr666576	regulatory region 666576	within coordinates
Rr666577	regulatory region 666577	105 bp proximal
Rr666578	regulatory region 666578	675 bp proximal
Trmt1	tRNA methyltransferase 1	within coordinates
Tssr78430	transcription start site region 78430	152 bp upstream
Tssr78431	transcription start site region 78431	191 bp upstream
Tssr82112	transcription start site region 82112	1546 bp upstream
Tssr82113	transcription start site region 82113	1498 bp upstream
Tssr82114	transcription start site region 82114	1233 bp upstream
Tssr82115	transcription start site region 82115	1207 bp upstream