rs46155222 SNP Detail

Summary

• ID
  rs46155222
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106104654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGAGCCAA ATGTATGTTT
  CTCCAGGTTA GCTCTGTTTC GATTGAATTT AGGGCAGGTG GCTCGCATGT CTCCAGCTAA
  TTTTTGAGCT ATTATTTTCC ATATGGTGGC AGAGATAGCA GGAGTGAGCT TGCGCCATAG
  GAAGTCAACA AAGGATGTGA TTGCGGTGGC ACCTTGGCAG GAGATCTTAA AACTAATAAA
  G
  AAATGGTCTT TCTTTCTCTC CAGATAGTTC ACAGGGTCAT TTGCAGTCTT GAATGCCTCG
  TGCATTTTCT TGAAATCCTT GGATGCTCTT TGGAATAAGT ACAAGGATAA GTCAATGATG
  TAGTCTCTGG TAAATGTGTA GTCTCCCTCA CAGGGTTCAG ATTTCAGCTC ATTTTCTATG
  ATCTTCAAGA TTTCATGAAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145614795	ENSMUSSNP5942553	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46155222					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106104654 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr68401	transcription start site region 68401	1809 bp downstream
Tssr74117	transcription start site region 74117	1921 bp upstream
Tssr74118	transcription start site region 74118	1874 bp upstream
Tssr74119	transcription start site region 74119	1476 bp upstream
Tssr74120	transcription start site region 74120	1459 bp upstream
Tssr74121	transcription start site region 74121	1396 bp upstream
Tssr74122	transcription start site region 74122	1379 bp upstream
Tssr74123	transcription start site region 74123	1346 bp upstream
Tssr74124	transcription start site region 74124	1301 bp upstream
Tssr74125	transcription start site region 74125	1290 bp upstream
Tssr74126	transcription start site region 74126	1254 bp upstream
Tssr74127	transcription start site region 74127	1103 bp upstream
Tssr74128	transcription start site region 74128	1023 bp upstream
Tssr74129	transcription start site region 74129	492 bp upstream
Tssr74130	transcription start site region 74130	443 bp upstream
Tssr74131	transcription start site region 74131	232 bp upstream
Tssr74132	transcription start site region 74132	56 bp upstream
Tssr74133	transcription start site region 74133	593 bp downstream
Tssr74134	transcription start site region 74134	820 bp downstream
Tssr74135	transcription start site region 74135	903 bp downstream
Tssr74136	transcription start site region 74136	971 bp downstream
Tssr74137	transcription start site region 74137	1037 bp downstream
Tssr74138	transcription start site region 74138	1067 bp downstream
Tssr74139	transcription start site region 74139	1101 bp downstream
Tssr74140	transcription start site region 74140	1156 bp downstream
Tssr74141	transcription start site region 74141	1556 bp downstream
Tssr74142	transcription start site region 74142	1699 bp downstream