rs46156289 SNP Detail

Summary

• ID
  rs46156289
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123365708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGATCATGA CAATAAGAAA TAGAATATTC TAAAAACTTG
  GGGAGAGCTT CAAGGTCGCC TTCATCTACA CAATGAGTTA GAGGCCTGCC TGAGATGCAG
  C
  AAATCTTGTC TGGAAAAAGA AAAAGAAAAG AAACAGAAAA CAAAAAACAA ATCGCTTGAA
  AGCCTCTTTC AAACACTCAG GGGCTTCGTA GATGTTAAG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149193618	ENSMUSSNP3540819	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss321670459	CHEV_5_123677654	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46156289					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123365708 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16580	CpG island 16580	459 bp proximal
Psmd9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	545 bp upstream
Rr124341	regulatory region 124341	92 bp proximal
Rr399344	regulatory region 399344	426 bp upstream
Tssr48774	transcription start site region 48774	571 bp upstream
Tssr48775	transcription start site region 48775	593 bp upstream