rs46156465 SNP Detail

Summary

• ID
  rs46156465
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48665251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AAACTCCCTA TCCCAGCCTC CCTCCCCCTG CCTATATGAA
  GGTGTTTCCC CCAACCACCC ACCCACTCCC ACCTCCCTGC CCTGATATTC CCCTACACTG
  T
  GTCATCAAGC CTTCACAGGA CCAAGGGCCT CTTCTCCCAC TAATGTCCAA CAAGGCTATC
  CTCTGCTACA TATGAAGCTG TAGCCATGGG TCCCTCCATG T                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148115363	ENSMUSSNP1886762	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46156465					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48665251 () rs orientation: forward

Symbol	Name	Function Class
Retnla	resistin like alpha	427 bp downstream
Tssr138687	transcription start site region 138687	1991 bp downstream
Tssr138688	transcription start site region 138688	1293 bp downstream
Tssr138689	transcription start site region 138689	705 bp downstream
Tssr138690	transcription start site region 138690	648 bp downstream
Tssr138691	transcription start site region 138691	595 bp downstream