rs46156833 SNP Detail

Summary

• ID
  rs46156833
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10183677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTGTCCTC TGACAAATTA CACTCAAAAT GCACTCATTG
  GTACCTAAAC GCACACATAT ACACAGAGTA AATAAAGGTA ATACAATTTA ACACACGCAG
  M
  CAAAATGATT GTAATTTCCA CAGTGACTCA CTTGAAGGAG TGCCCAGCAG CACACATCTG
  CTCCACGGTC TCCCCAGATT GAAACTGAGA TGGCCTGTT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146041387	ENSMUSSNP4394171	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss325720143	CHEV_19_10280803	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46156833					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10183677 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10601	CpG island 10601	1840 bp distal
Myrf	myelin regulatory factor	1959 bp downstream
Rr356596	regulatory region 356596	124 bp proximal
Rr361277	regulatory region 361277	1168 bp proximal
Rr362959	regulatory region 362959	876 bp distal
Rr405855	regulatory region 405855	1958 bp downstream
Tmem258	transmembrane protein 258	within coordinates
Tssr155040	transcription start site region 155040	147 bp upstream
Tssr158167	transcription start site region 158167	1900 bp upstream