rs46158672 SNP Detail

Summary

• ID
  rs46158672
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153472302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACATTTT GCATTCCTTC
  TCTCTTTCTC TTCCTCCCTC CCTCTGCATT TCTCTCTCTC TGCATGCATG TGCTCCCTCT
  TCCTCCCTCC CTCCCTCCCT CCCTTTCCCC CTCCCCTCTG TGTCCCTGTC TGCATGGCAA
  CTTCTCTGGC CTCCTTCCTT GGGACTAGTG AACCTGCCAG AGAGCTGCCC TCAATAAATC
  T
  GCCTTTGTAC TTTTTATTTT ATGTGTGTGA GTACCCTGTA GCTGTCTTCA GACACACCAG
  AAGAGGGCGT CGGATCTCAT TACAGATGGT TGTGAGCCAC CACGTGGTTG TTGGGAATTG
  AACTCAGGAT CTCTGGAAGA GCAGTCAGTG CTTTTAACCA CTGAACCATC TCTCCAGTCC
  GCACCCCCTT GCCCCAACCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147999380	ENSMUSSNP3618997	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46158672					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153472302 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Commd7	COMM domain containing 7			Intron
				Noncoding-Transcript-Variant
Cpgi12491	CpG island 12491			1916 bp proximal
Rr567709	regulatory region 567709			53 bp proximal