rs46159150 SNP Detail

Summary

• ID
  rs46159150
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13430026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGACAAAT GGCATAATGC ATTCTTTTAA TTTTTTAATT
  AACATCTTTT TTTTTTTTTT TTTTTTTTTT GGTCATCTTT CTCAGAGCTC GGGGTGGGAA
  A
  AAGAGAGCCT TTGTTCATCA GTTGTCGAGT TGAGAATTTG TTGGTTTAAG GAAGATCAAG
  TCACCATTTC AGTGGCAGAG CTTTGGCCTC TTCCAAAGA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146822737	ENSMUSSNP1826874	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs46159150					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13430026 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	within coordinates
Cpgi1315	CpG island 1315	797 bp distal
Pex3	peroxisomal biogenesis factor 3	1140 bp upstream
Rr368928	regulatory region 368928	971 bp downstream
Rr427802	regulatory region 427802	1455 bp distal
Rr427803	regulatory region 427803	1378 bp distal
Rr427804	regulatory region 427804	1173 bp distal
Rr427805	regulatory region 427805	650 bp distal
Rr427806	regulatory region 427806	110 bp proximal
Tssr92399	transcription start site region 92399	1043 bp downstream
Tssr92400	transcription start site region 92400	1024 bp downstream
Tssr96771	transcription start site region 96771	1412 bp upstream
Tssr96772	transcription start site region 96772	1221 bp upstream
Tssr96773	transcription start site region 96773	1197 bp upstream
Tssr96774	transcription start site region 96774	1156 bp upstream
Tssr96775	transcription start site region 96775	1129 bp upstream
Tssr96776	transcription start site region 96776	1116 bp upstream