rs46159561 SNP Detail

Summary

• ID
  rs46159561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16235975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAGTGTT CTAGAGGTGA
  TCCCAGGGGC ACACACACGG GGATCGGAAA AACATTTTCA GGAGTGGTTC TCTCCTATCA
  CGTGGGTTCC AGGTATAGAA CTCATGTTGT CAGTTTTTGG TGTAAGTGCC CTTATCTGCC
  CAGCCATTTT GCTGGCCTTG GACTATTTCT TAAACTTACT TTGGAGCCAG GCAGTGGTGG
  Y
  GCATACCTTT AATCCCAGCA CTCGGAGGCT GAGGCAGGCT GATTTCTGAG TTCGAGGACA
  GCCTCGGCTA CAGAATGAGG TTTTAAAAAA TTTTTAATTT TTGAAACGTA GCCTTGGCTG
  TCCTGGAACT CATATAGATC AGGCTAGCCT CAAACTCACA GAGATCCACC CTCAAGTGCT
  GAGTTTAAAG GTATGTGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss134642349	ENSMUSSNP605073	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46159561					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16235975 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12993	CpG island 12993	1070 bp proximal
Gm64384	predicted gene, 64384	711 bp downstream
Rr397612	regulatory region 397612	1173 bp upstream
Rr573789	regulatory region 573789	1425 bp distal
Rr573790	regulatory region 573790	911 bp proximal
Rr573791	regulatory region 573791	1436 bp proximal
Rr573792	regulatory region 573792	1897 bp proximal
Tssr833	transcription start site region 833	1802 bp downstream
Tssr28473	transcription start site region 28473	1366 bp upstream
Tssr28474	transcription start site region 28474	1397 bp upstream
Tssr28475	transcription start site region 28475	1486 bp upstream
Tssr32661	transcription start site region 32661	1831 bp downstream
Ythdf3	YTH N6-methyladenosine RNA binding protein 3	1401 bp upstream