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rs46160501 SNP Detail
Summary
  • ID
    rs46160501
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr12:119912420 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATTCTTGGAA GAATAGTTTT
    GAATACTGTA ATATGGTTTT GTAAAAAGAA AAATAAAAAT TCATTCACTC AACTGAATGA
    ATTATTTTGA CACTGAAATG TTCAAATAAT TACTCACTTT TTAAATTCCA TGTCATAAGA
    AAAAAATACA TTTGTAAAGA AATAAATCCC CAGTTGGAAT AATCATGATT TTCAAAATGT
    W
    AAGTGGCTAA GCATATTATT GAAATGGTTT CAAATTCTTT TGTGATATAT TTTTGGATGA
    TCTTTTCATT TCTTCTCTGG TAAATCCATA TAACTAATAT TTATAGAGAG TTCAACATGT
    GAATTGCATT TTACTAGTGA CTACAGAAAC TACAAAATAT GAGTCAAAAT ACTGTCTTCA
    GAGAGGTATT ACCCACCCCA                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss61734968 NES17669757 PERLEGEN MM_PANEL2 f SNP A A A A A A A A A A T A A T A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs46160501 SNP A A A A A A A A A A T A A T A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss61734968 NES17669757 PERLEGEN MM_PANEL f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:119912420 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi5238 CpG island 5238 1935 bp distal
Tmem196 transmembrane protein 196 Intron

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory