rs46162103 SNP Detail

Summary

• ID
  rs46162103
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113389467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ATTTTAGAAG CACTCAGAGA AGCCCACCCA TCTCAGCTCA
  GCTGTGCTTT TTAGAGCCTC GCTTACTAGG GCTCTCAACC TTGTTCCCTT AATTTTGCTC
  R
  GCAAGCTTTA TGAGTCTGGC TTTCTCTGTC TGGGTCATTA CTGTGGCTGG AGAGTTAGTC
  CAGCCGACCT GCTGGCCTCA ACTGCAGGTC TCTATTCTTT C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss138742238	ENSMUSSNP4945717	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46162103					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113389467 () rs orientation: forward

Symbol	Name	Function Class
Gm54570	predicted gene, 54570	1125 bp upstream
Gm54571	predicted gene, 54571	1059 bp upstream
Gm54572	predicted gene, 54572	1064 bp upstream
Gm54573	predicted gene, 54573	620 bp upstream
Gm56536	predicted gene, 56536	106 bp downstream
Igh	immunoglobulin heavy chain complex	within coordinates
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Rr148	regulatory region 148	1546 bp proximal
Rr149	regulatory region 149	1726 bp proximal
Rr150	regulatory region 150	1404 bp proximal
Rr185	regulatory region 185	within coordinates
Rr554	regulatory region 554	1776 bp proximal
Rr555	regulatory region 555	1128 bp proximal
Rr265147	regulatory region 265147	733 bp proximal
Rr403535	regulatory region 403535	1216 bp downstream
Rr403536	regulatory region 403536	1510 bp upstream
Tssr3971	transcription start site region 3971	1619 bp downstream
Tssr3972	transcription start site region 3972	1663 bp downstream
Tssr3973	transcription start site region 3973	1676 bp downstream
Tssr117985	transcription start site region 117985	457 bp upstream
Tssr117986	transcription start site region 117986	413 bp upstream
Tssr117987	transcription start site region 117987	349 bp upstream
Tssr117988	transcription start site region 117988	153 bp upstream
Tssr117989	transcription start site region 117989	115 bp upstream
Tssr117990	transcription start site region 117990	71 bp upstream
Tssr117991	transcription start site region 117991	9 bp upstream
Tssr117992	transcription start site region 117992	77 bp downstream
Tssr117993	transcription start site region 117993	145 bp downstream
Tssr117994	transcription start site region 117994	844 bp downstream
Tssr117995	transcription start site region 117995	920 bp downstream
Tssr117996	transcription start site region 117996	936 bp downstream
Tssr117997	transcription start site region 117997	976 bp downstream
Tssr117998	transcription start site region 117998	1043 bp downstream
Tssr117999	transcription start site region 117999	1069 bp downstream
Tssr118000	transcription start site region 118000	1113 bp downstream
Tssr118001	transcription start site region 118001	1438 bp downstream
Tssr118002	transcription start site region 118002	1470 bp downstream
Tssr118003	transcription start site region 118003	1485 bp downstream
Tssr118004	transcription start site region 118004	1560 bp downstream