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rs46162344 SNP Detail
Summary
  • ID
    rs46162344
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr12:84407258 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGTTTCTACT GAGCGCATGC
    TTGTCCATCA TTATAGTGTG GAGAGCAATC TGAACCACTG AGGTTGGGGG TGTCTGACTT
    TGAGTGTTAG GGTGATTTTT ATTGTCTCAG TTGAGTCTTG TAGTGATAGA GGGAAGGTGG
    TGTGGCTGGA GGACAGTGGC CTGAGATGTC CTTAGAGTGG TAGGTACAAG GCCACCAGTG
    S
    ACTATTGATG ATTAGTGGCA ATTGGAGCAG TCCATCTGAG TTAGAGATAA GTGTGTGCTC
    TAACCCTAGC TCTGCTGCTG AAGAACATGT GATCTAGAGC AAAACTCTCT CCTTCCCCTG
    CCCCTCTCTC TCTGTTGTGA CAGGGTCAAA GGGCGACCTT GAACTCCTTA TCCTTCTGCT
    TTAGTAATTT GAGTTGTTGG                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss61661756 NES17608513 PERLEGEN MM_PANEL2 f SNP G G G G G G C G G G C G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs46162344 SNP G G G G G G C G G G C G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss61661756 NES17608513 PERLEGEN MM_PANEL f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:84407258 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Coq6 coenzyme Q6 monooxygenase 1272 bp upstream
Cpgi4867 CpG island 4867 1122 bp proximal
Fam161b family with sequence similarity 161, member B Intron
Noncoding-Transcript-Variant
Rr403407 regulatory region 403407 1229 bp upstream
Rr469627 regulatory region 469627 1238 bp distal
Rr469628 regulatory region 469628 825 bp proximal
Rr469629 regulatory region 469629 909 bp proximal
Rr469630 regulatory region 469630 1327 bp proximal
Tssr114338 transcription start site region 114338 1152 bp upstream
Tssr114339 transcription start site region 114339 1517 bp upstream
Tssr114340 transcription start site region 114340 1545 bp upstream
Tssr116998 transcription start site region 116998 1298 bp downstream
Tssr116999 transcription start site region 116999 1318 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory