rs46163997 SNP Detail

Summary

• ID
  rs46163997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122836754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGCTCAT CAGGTAGAAT
  GCATTTGAGC TTTTTTTAGT CAGCTGTAAA GCAGGAGTCT GAGTACCACA CCCATGATGC
  TTTGCAAACA GAAACTGTTG CTTAGAGCCA ACAGAGCCTG GGTCCCCAGT GTGTTGAGTT
  CAGGGCAGTT CGAGGCTGTT TATTCTGCTA ACAGTGGCTG AGGGACTGGA AAGGCTAACA
  Y
  GGTCTTCATT TCTATTTGTC TTCAGACCGA AAGCAAACAA AAAAGAAAAA ACAGATTTTT
  TTTAAAATAA GGAGACGAGC CACGTCAGAG GCACACCCTT GACAGCCTTG CTTTGTTTTG
  ATTCAAATCT TCCCTTAAGT TGGAAGCTGT CCCGTGACAA GAGCACAAGA CGTTCACCCT
  GAGAAGTTAC GTTTCCTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss149189858	ENSMUSSNP5301398	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46163997					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122836754 () rs orientation: forward

Symbol	Name	Function Class
Gm10064	predicted gene 10064	1091 bp upstream
Gm71244	predicted gene, 71244	within coordinates
Rr378567	regulatory region 378567	within coordinates
Rr619948	regulatory region 619948	within coordinates
Rr619949	regulatory region 619949	1524 bp proximal
Rr619950	regulatory region 619950	1910 bp proximal