rs46164103 SNP Detail

Summary

• ID
  rs46164103
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144996771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTGTCTG CCTGCCTTGT
  GTGTGTTTGC ATTTTCTTCA CAAATCTTAA ATCCAATTGT CCCTTTTGCA AGAACAATCA
  ATTAACACTC CATGACCTAA TCTTTAAATC TCCTTACCCC TGCTTCTATA ATCTGCACAG
  GGCAAGCCTG CTGAGAGACA GTCCACAGAT GACCTGGTAA TGGGAGTCTC CTCTTCCCTC
  M
  CACTGCCGTA CAAAATGTGT CACAGGGTGG CCATATACGG ACAGATTACA AGGCAGTCCA
  GTGTCACACG GAAAATGAAT GTGCTAAATG CTTCTGACAC CCCAGGCTCC TCTCAGGCCA
  GAAAGCCAAG CCTACCCCTT ACTCCCCCAC TCTCCTATGG GCTGCTCATT ATCTCTGCCT
  TAGCCTGAAA GCCTCCAGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133960898	ENSMUSSNP2656875	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46164103					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144996771 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Cpgi18152	CpG island 18152	1832 bp distal
Gm15687	predicted gene 15687	within coordinates
Gm26666	predicted gene, 26666	within coordinates
Rr641041	regulatory region 641041	1743 bp distal
Tssr2055	transcription start site region 2055	1966 bp upstream