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rs46164517 SNP Detail
Summary
  • ID
    rs46164517
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr15:60689567 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAGGGTTATT GATTCTCAAA
    GCCTGTGTCT TTAGCACGGC TTCCCTGGCC TGAACCTGCT TGAGCACAGG CACCGTTGAG
    AGTGGCTTGA TTGTTCCCAC CATGATGCTC TGTTAACTCC AAATAAGAAG AATCTCTGCT
    TGCAGTTTTG TTGTCCCAGA TTGACACCAC GTTGGGCTCA ACACTCTCTG GTCCTTCATA
    R
    TGCTCAGGGC TGTACCTCAT TATGATTGCG AATGCATTTC TTCTGCAGAC AAATTGCTAT
    ATTTGTTTAA TAAGCAGTTT CCCTAGTAAA TTTAGTGAAA GGAAATAGAA GCCTTTTTTT
    TTTTTTTTTT TTTTGCACCT ATTCTGAGCC TGTTCGTTTT TGAGGTTCTT TTAAACACTT
    CTCAACATGT CATTTTCCTA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss63528709 NES17014392 PERLEGEN MM_PANEL2 f SNP A A A A A A A A A A A A A G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs46164517 SNP A A A A A A A A A A A A A G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss63528709 NES17014392 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:60689567 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Lratd2 LRAT domain containing 1 1278 bp downstream
Tssr134471 transcription start site region 134471 1998 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory