rs46164781 SNP Detail

Summary

• ID
  rs46164781
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:118340983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGTTT TCTCTCTTTT
  CAAATGGAGT AACAGCAGTC CTTGGAAAAA ATGCCTACCC TTAGGGAAAA AATTAGATGA
  TGATAACAAC AAAAGGAGAA AGAAAAGAAA ACCAAAAAAA TCCATCACCA GCCCAGCCAG
  GACCGTCAGC ATGCGCCCCT GTTTAGGAAG CACCCATGCT TGTGCGTGTC TTCAAAGTCA
  K
  AAGCAGCTTC CTGTAGGAGA GCCACAGGGC AGGCCTGGGC CGCTGAGCCT TGAAACACTC
  TCTGATACCG AGACGGGCAC AGGAAGTACA ACCGCTGACT TCTCAGAGGA AGCCTCAGTG
  CCGCTTCGCA GAGTTGAAAG ACAGACTGAA GAGAAAGAAG ATGAAGAATG GTAAGCCCAT
  CAATGTCAAA GACACTAGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss52610950	NES15502341	PERLEGEN	MM_PANEL2	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs46164781					SNP	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52610950	NES15502341	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:118340983 () rs orientation: forward

Symbol	Name	Function Class
Rr369642	regulatory region 369642	within coordinates
Rr387826	regulatory region 387826	1296 bp downstream
Rr474222	regulatory region 474222	within coordinates
Tssr115561	transcription start site region 115561	483 bp downstream