rs46164804 SNP Detail

Summary

• ID
  rs46164804
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4296531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTGGCAG AACAGGCTCC
  ACCTCCAGCA AAAAGAACGT ATGGGCTCAA CTGAGTCAGT GAGATTGAGC AGTGGGGGAT
  GCTCACAGAC CATTCAGGAC ATTCAAGTGC AGGTGCTCTT CTGACAAGAG CAGTTACTGT
  CAGCATAGGG TCAGCACTAT GTAAGCAGAC AATTGTCCTT TAGGAACTTC TCTAGGAACG
  R
  ACTCTTCTTC CCGGGGCCAC AAGGCAGGCA GTTTCCTCAT TCCAGCGTCT CAGTTTTCCT
  CACTGTCCCT GTTGGCTGTT CTCTGTCCAC TGCCACTCAG GATAACTTTG CGCCAGTGGG
  AGGCTCCATC TAAAAGAAGT TTCTCTCATC TAAACTATAG GAAAATGTAT TATTTCACTC
  CAGAATATGA TTCTAAACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61338482	NES16941012	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G		G	A	G	G		G
ss323873821	CHEV_12_4246531	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46164804					SNP	A	A	A	A	A	A	G	A	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61338482	NES16941012	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4296531 () rs orientation: forward

Symbol	Name	Function Class
4921501I09Rik	RIKEN cDNA 4921501I09 gene	within coordinates
Ncoa1	nuclear receptor coactivator 1	831 bp downstream
Rr260536	regulatory region 260536	1931 bp distal
Rr263521	regulatory region 263521	423 bp distal
Tssr115633	transcription start site region 115633	1828 bp downstream