rs46164888 SNP Detail

Summary

• ID
  rs46164888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:118407992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAACTGCC ACCCACCCTC
  CTGACCTAGG TAGGTCTTCT CATCTCTGTT TTATGGACAC AAATTCAGGG GAGATTTGCA
  CTGGCTTCCT GGCGTTAGCC AGGGGTACCC TCCACTGGGA AGACAGCTCC TGCTATATGG
  GAAGTGGGGT CCCTAGGAGT AGCAGGTTAG GTGTTTGCCC TGAAATTGGC CTGGGATTGG
  R
  ACTATTGTTT AAGCAAAAGT TTACACTAAA AAGGTTTTTT TTTTTTTAGA AAAAAAAAAG
  ACATTATTCA TTATTTTTAG TTGTGTGTGT GTGTACAAGT GCAGGTTCCC ACGGAGGTTA
  GAGGCCCTGG AGGCCCTGGA GCTAAGTCCC AGACAGTTTT TAGCCACCTG ACATAGGCAC
  TAGGAATAGA AACTGGGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60831453	NES16022156	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46164888					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60831453	NES16022156	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118407992 () rs orientation: forward

Symbol	Name	Function Class
Gm73266	predicted gene, 73266	within coordinates
Rr618848	regulatory region 618848	663 bp distal
Rr618849	regulatory region 618849	712 bp distal
Rr618850	regulatory region 618850	203 bp distal