rs46166968 SNP Detail

Summary

• ID
  rs46166968
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:37228060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTTGACT ACTAACTGAT
  TAGGAGATTG GCTTAATTCT GACAAAGAAT GGTAGGAGGG AAGAAATTCT TAGAAAAATA
  CCTAGATTCC ACTATCCTAA AACCTCCTGG GTTTGCCTCC ATTTGAATGT TCATCAGGCT
  GTCCTTGCTT CCTTGTTTGA CTCCAACACA GTAGTCCTGC CACGTAAATA TTCTAATTAC
  R
  GCTCTAAATG GCCACTCTGT AACAGAATCC CACAGCCCAG GAGGATGAAC TGGTATTATG
  CAGCATTACA TTTCTAGCCA CACACAACTT GAAACCAGGA AGGCTATGAA GAGATTTTGC
  AGAAATACCA ACTGACTATG TAGGACACTT CAGTGAGAAA TGAATGCCAA TTTGGGAATG
  AAAAGATGGC TCGTCTGGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61768047	NES17689109	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46166968					SNP	A	A	A	A	A	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61768047	NES17689109	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:37228060 () rs orientation: forward

Symbol	Name	Function Class
F13a1	coagulation factor XIII, A1 subunit	within coordinates
Rr271551	regulatory region 271551	941 bp proximal
Rr279043	regulatory region 279043	1037 bp proximal
Rr283270	regulatory region 283270	1541 bp proximal