rs46167293 SNP Detail

Summary

• ID
  rs46167293
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44058415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGTGTAGT GATTCTAAGT GCCCAGACGA GGACCAAGTC
  TCCTGGGGTG GGTCACTCGG ACAGACGCTG GTTGAGGCAT GCTAGTGCAC AGGACCAGCC
  A
  CTCAGTGTAG GAGTTGTTCC TGCATCCTTT TGTGGTTCGT CCCTAGTCCA ACTGGCAAGC
  ACATTCTCCA GGTACACACC CTGCACTAGG GAAACTACC                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146433165	ENSMUSSNP7122045	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46167293					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44058415 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10883	CpG island 10883	within coordinates
Erlin1	ER lipid raft associated 1	191 bp upstream
Gm59010	predicted gene, 59010	within coordinates
Rr548150	regulatory region 548150	106 bp distal
Rr548151	regulatory region 548151	within coordinates
Rr548152	regulatory region 548152	501 bp proximal
Tssr159429	transcription start site region 159429	554 bp upstream
Tssr159430	transcription start site region 159430	301 bp upstream
Tssr159431	transcription start site region 159431	268 bp upstream
Tssr159432	transcription start site region 159432	189 bp upstream