rs46171048 SNP Detail

Summary

• ID
  rs46171048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41491651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGAGCTG AACCAAGGAC
  TGTGTATGAG CTGAACCTAC AGAGGTGAGG AAAAAAAGAA AAGTTTTGTA TGTGTCTGTG
  GTGTGTGTCT GTCTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTTGGGGAGG TGTTCTAAAC AGACCATGTA GTGAAGGAAA AGACACGGTT TAGCGGGCTG
  R
  CTGGCTGGCA TGATTGTAGT TCTTCTGGTG AGGAGGGGGT GAGCCTGGAG CTCTTAACTG
  TTTCTAGTTG TATATGAAAG CATATTTAAA ATAGTTAGCT ATTTTCCTTT TCTTTTTATT
  TATTATTATT AATTTTTTTT TATTCTGAGT CTAAGGGCCC CCTCCAGTGT CTTCCTTACA
  GCGGTGCTTT GTTATTCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61386157	NES16764718	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46171048					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386157	NES16764718	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41491651 () rs orientation: forward

Symbol	Name	Function Class
Gm28119	predicted gene 28119	1553 bp upstream
Gm51670	predicted gene, 51670	1084 bp upstream
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Mir125b-1	microRNA 125b-1	1571 bp upstream
Rr677060	regulatory region 677060	851 bp distal
Rr677061	regulatory region 677061	367 bp distal
Rr677062	regulatory region 677062	within coordinates
Rr677063	regulatory region 677063	997 bp proximal
Rr677064	regulatory region 677064	1111 bp proximal
Rr677065	regulatory region 677065	1327 bp proximal
Rr677066	regulatory region 677066	1658 bp proximal
Rr677067	regulatory region 677067	1785 bp proximal
Tssr84512	transcription start site region 84512	686 bp downstream
Tssr84513	transcription start site region 84513	638 bp downstream
Tssr84514	transcription start site region 84514	463 bp downstream
Tssr84515	transcription start site region 84515	388 bp downstream
Tssr84516	transcription start site region 84516	364 bp downstream
Tssr84517	transcription start site region 84517	338 bp downstream
Tssr84518	transcription start site region 84518	348 bp upstream
Tssr84519	transcription start site region 84519	396 bp upstream
Tssr84520	transcription start site region 84520	548 bp upstream
Tssr84521	transcription start site region 84521	589 bp upstream
Tssr84522	transcription start site region 84522	613 bp upstream
Tssr84523	transcription start site region 84523	711 bp upstream
Tssr84524	transcription start site region 84524	892 bp upstream
Tssr84525	transcription start site region 84525	945 bp upstream
Tssr84526	transcription start site region 84526	976 bp upstream
Tssr84527	transcription start site region 84527	1645 bp upstream
Tssr88995	transcription start site region 88995	832 bp upstream
Tssr88996	transcription start site region 88996	792 bp upstream
Tssr88997	transcription start site region 88997	431 bp downstream