rs46171179 SNP Detail

Summary

• ID
  rs46171179
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54243320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTC ATGGCAGAGT CAGATGTGAA
  Y
  ACAGGCTCTC TGCCCCTTGC CAAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss132138629	ENSMUSSNP1414425	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss323673799	CHEV_11_54165996	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46171179					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54243320 () rs orientation: forward

Symbol	Name	Function Class
Acsl6	acyl-CoA synthetase long-chain family member 6	within coordinates
Gm12224	predicted gene 12224	within coordinates
Rr246748	regulatory region 246748	680 bp proximal
Tssr107987	transcription start site region 107987	753 bp downstream
Tssr107988	transcription start site region 107988	792 bp downstream
Tssr107989	transcription start site region 107989	964 bp downstream