rs46171769 SNP Detail

Summary

• ID
  rs46171769
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:83081676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCACACCA ACTACTCTGC ACTATCATGT TTGACATTCG
  TGTGTTATTT TAATAATCTG TGCTGGAGAG CAGAAATATT TGTGCCTCAT TTAAAATGCT
  R
  TCAAGTATAA AGTTTTTTTG TTTTTGTTTT TTAAGTAGCA TTTGAGATAA ATATATTTCT
  GGCCCAAAGA ATAAAGAAAG ATGTCTTTGA GAATACAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145303303	ENSMUSSNP4424412	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss322735754	CHEV_8_84878946	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46171769					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:83081676 () rs orientation: forward

Symbol	Name	Function Class
Il15	interleukin 15	within coordinates
Tssr81943	transcription start site region 81943	1625 bp upstream
Tssr81944	transcription start site region 81944	1567 bp upstream
Tssr81945	transcription start site region 81945	1516 bp upstream
Tssr81946	transcription start site region 81946	1463 bp upstream
Tssr81947	transcription start site region 81947	700 bp upstream
Tssr81948	transcription start site region 81948	1118 bp downstream
Tssr81949	transcription start site region 81949	1967 bp downstream