rs46172049 SNP Detail

Summary

• ID
  rs46172049
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:88872830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCCCAGAG ACAGTATCAG
  TCATCTCTAA TGGCCATAGT GCACTCAGGA GGTCCCGAAG CCTAGGAAGC AAGTTTGTTC
  TAGGTAGGTT TCAAGGAGGT TTATGAAAAA TATTTAATGA AAGGTAAGAG TTCTCTAAGA
  AAGAAAGGGG AGATAGCACT TCTTAGCAGA TGGGCTCTTC AATGTTCACT GTTCTACTGG
  M
  GGGACAAATC ATAGCTACCA GCTGAGGATT GTTGGTCCAG GTTTGGAAAA CAGTTCTCTT
  TTAGATTTTT GTTGTTGGTG GTAGTTTTTT ATTTTTATTT TTATTATTTA TGTGAAATGC
  AGAGAAATTA GAATAAAAAT GCAGAGAAAT TAGAATGAAA ATGAATCCTT TTTAATTAAT
  CATCAAAAAG TATGTTGTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61197823	NES16708864	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	A	A	A		A	A	A	A		A
ss321602379	CHEV_5_89153996	CHEVERUD	SCREENING_POP	f	SNP										A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46172049					SNP	A	A	A	A	C	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61197823	NES16708864	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:88872830 () rs orientation: forward

Symbol	Name	Function Class
Mob1b	MOB kinase activator 1B	Intron
Rr614172	regulatory region 614172	within coordinates
Rr614173	regulatory region 614173	959 bp distal
Rr614174	regulatory region 614174	983 bp proximal