rs46172516 SNP Detail

Summary

• ID
  rs46172516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3467827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCTGTCT CGAAAAAACA
  AAACAAAACA AACAAAAAAA AAAACCCAGA AAAACAAAAC AAAAAAAAGT TGCACAGAGG
  GCTGGAGAGA TGGCTCTTCA GTTAAGAGCT GGCTGCTCTT CCAGACGACT CAGGCTCAAT
  TCCCAGCACC CATATGGCAG TTCACAACTG TCTGTAATTC CAGTTCCAGG GGATCTGACA
  Y
  CCTCACACAG CATGCATGCA GGCAAAACAC CACTGCACAT GAAATAACAA TAAATAAATA
  AATAAATAAA TAAATGTTGC GCATCCACAA GTGAACTTAC TTTATCGTCA CTATCAATAC
  CTTAATGTTT ATTATGTCCT ACTCATCCGT CAGTAATTCT TATGAATTGA AAAACTCAGT
  TTTATTTGGG AAACTGTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146262150	ENSMUSSNP5500879	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46172516					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3467827 () rs orientation: forward

Symbol	Name	Function Class
Gm13184	predicted gene 13184	1781 bp upstream
Suv39h2	suppressor of variegation 3-9 2	within coordinates
Tssr15896	transcription start site region 15896	1798 bp upstream