rs46173007 SNP Detail

Summary

• ID
  rs46173007
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20889577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCAGAGA ACAGAATGTC
  CCAGCACCCA CAGACCTGAC AACTTCTGAG TCCAGCCCCA GGGGATCTGA CCCTTTCAGC
  CTCAAGGGCC CGTGTACACA CATGCACATA CCCACAATTA CACATAATTA AAAACAAAAA
  AAAATAAACA CACAAAAGTG TAAATTGCAC ACCCAAACAT AAGCTCCCTA AGAGCGAACA
  R
  TGTTTCCCTT GCTGTGTTTA ACATTGTGCC TTATGTCGGC ATTGAGATGT TTATGGAGGC
  AGGCGGCTCA GTGTTAGTTA CAGTACTTCC TCTCATGCAC AGGGCCCTGT GTTCTGTCTC
  CAACACCCCA AAAATAAATA AGTAAGCGGG TCACTGTTTG CAAGCCTAGC ATCCCTGCAC
  TTCAGTGGGT GGAGGCAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61357543	NES16731678	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46173007					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61357543	NES16731678	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20889577 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21408	CpG island 21408	1202 bp distal
Rr193935	regulatory region 193935	777 bp distal
Rr206018	regulatory region 206018	976 bp distal
Rr383049	regulatory region 383049	within coordinates
S1pr2	sphingosine-1-phosphate receptor 2	1488 bp upstream
Tssr88347	transcription start site region 88347	1562 bp upstream
Tssr88348	transcription start site region 88348	1533 bp upstream
Tssr88349	transcription start site region 88349	1507 bp upstream
Tssr88350	transcription start site region 88350	1025 bp downstream