rs46173954 SNP Detail

Summary

• ID
  rs46173954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:121746033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCATAGTA CAATGGATCA
  TTAAACGGTG AACCTGGGCA CTATTAGAAA CTGCTGTCCT GACATTGTTT TACATGTATT
  GTGCAATTGG GCACAGTTAT CTCTGACATA CATTCTTAGA AGTTGATTTA TAAGTACAGG
  GGTATAAATG TTGAAAACTT TGCTAACTTT TTATTTTATG TGTCTGTGTC CTTGCCTGCA
  Y
  ATATCTCTGC ACTACATGCA TGAAGCACCC AGACCTAGAG TTACACATGG TTGTTAGCTG
  TCATGTGGAT GTTGGTACTG AACCTAGGAC CTCTGTAAGA ACAGTTAGTG CTGCTCTTAA
  CTGCCAAGGC ATTTCTCCAG CCCTCTGCTA CCTATTTTTA AAGTGCATGA GTGGAGACAG
  CAGCTTACAT ACCTCTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss145833509	ENSMUSSNP5027667	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs46173954					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:121746033 () rs orientation: forward

Symbol	Name	Function Class
Dctn5	dynactin 5	within coordinates
Gm15489	predicted gene 15489	1478 bp downstream
Rr153390	regulatory region 153390	568 bp proximal
Tssr68863	transcription start site region 68863	1477 bp upstream