rs46176992 SNP Detail

Summary

• ID
  rs46176992
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:31217787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCCCTTA AGCCAAACTT
  TTCTCCTTTA GTAGCGATGC CCATTTCTCC TCCCTTGTGT CCCCGTTCTC TTTGTCGAAT
  TCTTCCATCA GGGCTCTTGC CCTGGAAAAG TCTTCCGTTT GCTACGAGTG TCGTTTACTT
  CATTCCTTCC CTTGCTCCTT TCCCCTTGCT CTTGGTCTCC TCCACAGCCA GGGAACCTGC
  R
  TTCTTCGTGC CACCCATAAG GTTTCTTCTT CCTCTCTGCT TATGACACTG ATTTTGTTGT
  TGTTGCTGTT CGAGACAGTC TTACTAGTGA TGCTGGCCTA GAAATTACTA TATAATTCAG
  GCCAGCGCTG AACATGCTGC AGTCCTCCTA CCTCAGCTTC TGTGGTGCTG AAAATATGGA
  CCTGATCCAC CATACCTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52709798	NES15559271	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A	G	A	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46176992					SNP	G	A	A	A	G	A	G	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52709798	NES15559271	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:31217787 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6292	CpG island 6292	72 bp distal
Eaf1	ELL associated factor 1	within coordinates
Gm63056	predicted gene, 63056	1564 bp upstream
Mettl6	methyltransferase 6, methylcytidine	790 bp upstream
Rr296978	regulatory region 296978	within coordinates
Tssr124943	transcription start site region 124943	1463 bp downstream
Tssr124944	transcription start site region 124944	735 bp downstream
Tssr124945	transcription start site region 124945	649 bp downstream
Tssr124946	transcription start site region 124946	587 bp upstream
Tssr127965	transcription start site region 127965	1565 bp upstream
Tssr127966	transcription start site region 127966	845 bp upstream
Tssr127967	transcription start site region 127967	776 bp upstream