rs46179242 SNP Detail

Summary

• ID
  rs46179242
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:3669175 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CGGAA TGAACTTTCT GTCTCCTATA
  Y
  TATGAGAAGG CATGCTTCAT CCTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146748658	ENSMUSSNP1887969	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss323242489	CHEV_10_6627366	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46179242					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:3669175 () rs orientation: reverse

Symbol	Name	Function Class
A330032P22Rik	RIKEN cDNA A330032P22 gene	within coordinates
Gm30164	predicted gene, 30164	1966 bp downstream
Gm56946	predicted gene, 56946	within coordinates
Rr426848	regulatory region 426848	1002 bp distal
Rr426849	regulatory region 426849	354 bp distal
Tssr92213	transcription start site region 92213	1007 bp downstream