rs46180241 SNP Detail

Summary

• ID
  rs46180241
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107426389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAA GCTACGGTTT CCTGGACTTA
  R
  CAAAATCTCG ATGTGAGTTC TCTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136948264	ENSMUSSNP6757743	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss323191573	CHEV_9_107451521	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46180241					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107426389 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22291	CpG island 22291	1731 bp distal
Cpgi22292	CpG island 22292	1749 bp proximal
Gm34106	predicted gene, 34106	within coordinates
Rr368855	regulatory region 368855	1910 bp upstream
Rr401661	regulatory region 401661	1841 bp downstream
Tssr86983	transcription start site region 86983	1811 bp downstream
Tssr86984	transcription start site region 86984	1580 bp upstream
Tssr91394	transcription start site region 91394	1645 bp downstream
Zmynd10	zinc finger, MYND domain containing 10	within coordinates