rs46180423 SNP Detail

Summary

• ID
  rs46180423
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:106553135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACAACAAA CAAAACAAGG TAGATACAGG CAACAGAAGT
  GTGTGAGAGA CACTGAATAC TGTTGTCCGT CTCTCCAGAA TCCAAACAGC CCAGCCTGGA
  R
  CCCAGGGGAA GGAAGTGGCA AAAATGGAAG TCACCAACAA CAACTTTAGC ACACAGCGCC
  TAGCCCAGTC CCGGGATGAC TGGCAGCCAG GCAGCCCATG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60658919	NES16259106	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46180423					SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60658919	NES16259106	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106553135 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20953	CpG island 20953	388 bp proximal
Ranbp10	RAN binding protein 10	Intron
Rr401097	regulatory region 401097	576 bp upstream
Rr669015	regulatory region 669015	1359 bp distal
Rr669016	regulatory region 669016	837 bp proximal
Rr669017	regulatory region 669017	1252 bp proximal
Tsnaxip1	translin-associated factor X (Tsnax) interacting protein 1	1228 bp upstream
Tssr79188	transcription start site region 79188	1218 bp upstream
Tssr79189	transcription start site region 79189	1250 bp upstream
Tssr79190	transcription start site region 79190	1267 bp upstream
Tssr82694	transcription start site region 82694	171 bp upstream
Tssr82695	transcription start site region 82695	687 bp downstream
Tssr82696	transcription start site region 82696	1090 bp downstream
Tssr82697	transcription start site region 82697	1114 bp downstream
Tssr82698	transcription start site region 82698	1139 bp downstream
Tssr82699	transcription start site region 82699	1177 bp downstream