rs46180526 SNP Detail

Summary

• ID
  rs46180526
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153862859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATTAGAG AAGAAACACA
  GAGAAGCTGT TTTTAATGTG CTGGATATCT GAACCACAAT AGATTTGGTA TTATTTCCCA
  TCTACTATTG AAGTGTCCTC AAATAGAGAC AGAAGAGTCA TACTTCTGCC GAAGGTCCTA
  AGTGTTCCAG ATTTACACTC TTTGAGGATT TCCCTGATCA TTTTTTTTTT TAATGGTTTT
  Y
  CAAGACAGGG TTTCTCTATG TAGCCCTGGC TGTCCTCCAT AGACCAGGCT GGCCTCTGAC
  TCAGAGATCC ACTTGCCTCT GCCTCCCCAG TGCTGGGATT AAAGGCTGCA CGGCTGCCCA
  GCTTGTTTGT GTCTGATTTC CTAGTCTTTT TCTTTCTATG TACGCCAGGT TGGCCTTCAC
  AGATCCTCCT GCCTCTGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145753069	ENSMUSSNP880157	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46180526					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153862859 () rs orientation: forward

Symbol	Name	Function Class
Rr420777	regulatory region 420777	169 bp distal
Rr420778	regulatory region 420778	1236 bp proximal