rs46180827 SNP Detail

Summary

• ID
  rs46180827
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:86236486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTC TGCTCAAAGA TGTGTTCGCT
  R
  TTGCGGCTAG CTAGGGCTCT TCTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60286280	NES15785346	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	G	G	A		G	A	A	G		A
ss146155885	ENSMUSSNP2241039	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					G
ss325490000	CHEV_17_86328398	CHEVERUD	SCREENING_POP	f	SNP									G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46180827					SNP	G	A	A	A	G	G	G	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60286280	NES15785346	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:86236486 () rs orientation: forward

Symbol	Name	Function Class
Gm30117	predicted gene, 30117	339 bp upstream
Rr532331	regulatory region 532331	523 bp distal
Rr532332	regulatory region 532332	124 bp distal
Rr532333	regulatory region 532333	776 bp proximal
Tssr149724	transcription start site region 149724	476 bp upstream