rs46181807 SNP Detail

Summary

• ID
  rs46181807
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27251933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCCGCACA GGTACCCAGT GCTAACAAAG ATGGAAGAGT
  GACCAGCGGA GCACTGGGGA CAGCAGGGGC GTGTCTGAGC TGACATACTT TGAGGTTACA
  M
  GGAGACCCTG TCACATAAAA AGAGAAAACT GAGCATATAA GGCCAATCAG GGCTTAAGGG
  GAATGAAAAT GAATAAAAAG GACAATGTTT GTGCTGAAGA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60985714	NES16135726	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs46181807					SNP	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60985714	NES16135726	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27251933 () rs orientation: forward

Symbol	Name	Function Class
2310022A10Rik	RIKEN cDNA 2310022A10 gene	725 bp upstream
Cpgi18668	CpG island 18668	294 bp proximal
Pld3	phospholipase D family member 3	within coordinates
Rr167329	regulatory region 167329	within coordinates
Tssr65296	transcription start site region 65296	736 bp upstream
Tssr71425	transcription start site region 71425	506 bp downstream
Tssr71426	transcription start site region 71426	596 bp downstream
Tssr71427	transcription start site region 71427	630 bp downstream