rs46181954 SNP Detail

Summary

• ID
  rs46181954
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14067689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTGGGTG GTGGTTTGGC
  TCCCTTAACT AACTCCTCAG TCTACAGTTT ATAAACTTGG TGCAGCTGTT TTCCATATTT
  GCAGGTAATT TGAGGATTTA ATTGTAAAGG TTATAAAGAC TTTAAAAAGT TTCCTTAACT
  CAGCTAAGAA ACTAAAAGTG CAATGTTACT TTAGTTAAAT GGTTTGGTGA CTTAAAAAAA
  W
  TTTTTTGGCA GTATAATTTG AGGGTAACTG AGATGGTCTC TTAATACTTT CTGAGTTATT
  TTTAAAAGCC AAAAGTTTTC CACAAATTTT TCTTTCACAT TTGAGTGACT AGCACAGTAG
  GATTCTGATG GTCTTATTTA AGCTAAAGAA TAGATAAAAA GAAAGACCAT TTTATCTGGA
  TACTTTGTTA TTTCTGGTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ
ss60543072	NES16555061	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ
rs46181954					SNP	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60543072	NES16555061	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14067689 () rs orientation: forward

Symbol	Name	Function Class
Afdn	afadin, adherens junction formation factor	within coordinates
Tssr142714	transcription start site region 142714	1334 bp downstream
Tssr142715	transcription start site region 142715	1308 bp downstream
Tssr142716	transcription start site region 142716	1267 bp downstream
Tssr142717	transcription start site region 142717	1244 bp downstream
Tssr142718	transcription start site region 142718	1231 bp downstream
Tssr142719	transcription start site region 142719	661 bp downstream