rs46182344 SNP Detail

Summary

• ID
  rs46182344
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:72894382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTG TTTCCATTGG AGTTTTAAGG
  R
  TATTTAGTTA TGAAGGTGAT TGTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61420819	NES16804875	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46182344					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61420819	NES16804875	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72894382 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccpg1	cell cycle progression 1			Intron
				Noncoding-Transcript-Variant
Cpgi22024	CpG island 22024			923 bp distal
Gm44503	predicted readthrough transcript (NMD candidate), 44503			Intron
Pierce2	piercer of microtubule wall 2			1724 bp upstream
Rr401512	regulatory region 401512			1478 bp downstream
Rr682884	regulatory region 682884			1742 bp distal
Rr682885	regulatory region 682885			1485 bp distal
Rr682886	regulatory region 682886			816 bp distal
Rr682887	regulatory region 682887			1299 bp distal
Tssr2935	transcription start site region 2935			1785 bp upstream
Tssr86066	transcription start site region 86066			1694 bp downstream
Tssr86067	transcription start site region 86067			1676 bp downstream
Tssr86068	transcription start site region 86068			1533 bp downstream
Tssr86069	transcription start site region 86069			1458 bp downstream
Tssr90501	transcription start site region 90501			1803 bp upstream
Tssr90502	transcription start site region 90502			1758 bp upstream
Tssr90503	transcription start site region 90503			1703 bp upstream