rs46182404 SNP Detail

Summary

• ID
  rs46182404
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126772933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAACAAAC AAACAACAAC AAGACTCTTA TTCCTCAGCT
  GGCTAGGGAT TTAGCTCAGT CGAGCACTCG CCTACCATTT ATGAAGCCAT TTGAGCACGG
  W
  GGTTCATGCC TACAATCCCC ACGCTACAGT CAGACAGTCA GACTCACTGT TATTCTTGGG
  GAGCTCAAGG GCAGCCAGTT TCAGACCCTG TTTGGGGGA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147514253	ENSMUSSNP4348724	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46182404					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126772933 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			1754 bp proximal
Gm75308	predicted gene, 75308			1680 bp upstream
Rr564422	regulatory region 564422			1316 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				Noncoding-Transcript-Variant
Tssr19974	transcription start site region 19974			1983 bp downstream
Tssr26084	transcription start site region 26084			888 bp downstream
Tssr26085	transcription start site region 26085			1980 bp downstream