rs46182675 SNP Detail

Summary

• ID
  rs46182675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29894551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAG ACCCTGCCGC CACCCAGCCG
  Y
  CGTCTGCGCG GTCCTAGAGC CTCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss60991869	NES16142339	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	T		T	T	C
ss322132200	CHEV_7_30980145	CHEVERUD	SCREENING_POP	f	SNP							T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs46182675					SNP	T	C	T	C	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60991869	NES16142339	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29894551 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18782	CpG island 18782	1085 bp distal
Cpgi18783	CpG island 18783	within coordinates
Gm26810	predicted gene, 26810	within coordinates
Rr380605	regulatory region 380605	1511 bp upstream
Rr400232	regulatory region 400232	1221 bp downstream
Rr400233	regulatory region 400233	within coordinates
Tssr65662	transcription start site region 65662	1169 bp downstream
Tssr71700	transcription start site region 71700	1983 bp upstream
Tssr71701	transcription start site region 71701	1759 bp upstream
Tssr71702	transcription start site region 71702	1307 bp upstream
Tssr71703	transcription start site region 71703	1093 bp upstream
Tssr71704	transcription start site region 71704	986 bp upstream
Tssr71705	transcription start site region 71705	964 bp upstream
Tssr71706	transcription start site region 71706	95 bp upstream
Tssr71707	transcription start site region 71707	83 bp upstream
Tssr71708	transcription start site region 71708	36 bp upstream
Tssr71709	transcription start site region 71709	95 bp downstream
Tssr71710	transcription start site region 71710	437 bp downstream