rs46182732 SNP Detail

Summary

• ID
  rs46182732
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123260880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAATATC AGAAATAGCA
  GCCTTAACAT AGCAAACAAC TTACATATTT GTTATTTAAC TATCATTTTG GGAGATGGAA
  ATTATAATCT CCATTTTATC AATGAGAAAA CCCATTTGCC TACATCATCA GATGGTGGGA
  CATTACTGGA TTTTTATGCT GTTATGCAGA TCTATAGATT TAAACTCATA AAGGGGCATC
  R
  TGGTGAGTAC TGCTGGCCTG GCATATGTGC TGCCTCTGTT CTTCTACCTT ACACCAATAT
  TACTTTTACT GCTCTGCCAG AGTTTGTTTT CCTGAGGCAT CCTTCATGTA CAGTAAGCCA
  CATCTTAGGT TTTAGGGCAG TCAAGCCCCT AAATTCATAG CTGCTGCTTG ATTTCAATGA
  AGACAAATAG TGAAAACCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60936892	NES16189336	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46182732					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936892	NES16189336	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123260880 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	1141 bp downstream
Tssr58809	transcription start site region 58809	504 bp downstream
Tssr58810	transcription start site region 58810	479 bp downstream
Tssr58811	transcription start site region 58811	390 bp downstream
Tssr63020	transcription start site region 63020	1417 bp upstream
Tssr63021	transcription start site region 63021	1339 bp upstream
Tssr63022	transcription start site region 63022	1300 bp upstream
Tssr63023	transcription start site region 63023	1245 bp upstream
Tssr63024	transcription start site region 63024	1147 bp upstream
Tssr63025	transcription start site region 63025	1115 bp upstream
Tssr63026	transcription start site region 63026	1094 bp upstream
Tssr63027	transcription start site region 63027	1056 bp upstream
Tssr63028	transcription start site region 63028	1031 bp upstream
Tssr63029	transcription start site region 63029	1003 bp upstream
Tssr63030	transcription start site region 63030	947 bp upstream
Tssr63031	transcription start site region 63031	917 bp upstream
Tssr63032	transcription start site region 63032	886 bp upstream
Tssr63033	transcription start site region 63033	872 bp upstream
Tssr63034	transcription start site region 63034	846 bp upstream
Tssr63035	transcription start site region 63035	831 bp upstream
Tssr63036	transcription start site region 63036	764 bp upstream
Tssr63037	transcription start site region 63037	731 bp upstream
Tssr63038	transcription start site region 63038	706 bp upstream
Tssr63039	transcription start site region 63039	638 bp upstream
Tssr63040	transcription start site region 63040	594 bp upstream
Tssr63041	transcription start site region 63041	547 bp upstream
Tssr63042	transcription start site region 63042	527 bp upstream
Tssr63043	transcription start site region 63043	510 bp upstream
Tssr63044	transcription start site region 63044	475 bp upstream
Tssr63045	transcription start site region 63045	395 bp upstream
Tssr63046	transcription start site region 63046	382 bp upstream
Tssr63047	transcription start site region 63047	361 bp upstream
Tssr63048	transcription start site region 63048	327 bp upstream
Tssr63049	transcription start site region 63049	303 bp upstream
Tssr63050	transcription start site region 63050	258 bp upstream
Tssr63051	transcription start site region 63051	236 bp upstream
Tssr63052	transcription start site region 63052	1266 bp downstream
Tssr63053	transcription start site region 63053	1376 bp downstream
Tssr63054	transcription start site region 63054	1543 bp downstream
Tssr63055	transcription start site region 63055	1570 bp downstream
Tssr63056	transcription start site region 63056	1611 bp downstream
Tssr63057	transcription start site region 63057	1644 bp downstream