rs46183444 SNP Detail

Summary

• ID
  rs46183444
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:60703577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACAGAACC TTGGCCCTCT
  GCAAGAGCAG CAGTGCTCTT ACCCACTGAG CCATCTCTCC AGCCCCTAAT TTAAAAAAAA
  ATAGATTTAA ATAATAAAAA TAAAAACAAA ACCCCACAGG GCTGGAGAGA TGGCTCAGCA
  GTTAAGAGCA CTGCTGCTCT TCCAGAGGAC CTGGGTTCAA TTCCCAACAC TCACATGGCA
  R
  CTCACAACAA TCCGTACTCC AGTTCCAGGG GATTTAGCAC CTTCGTATAC ATACAGGTAA
  AGTGTAACTT TGACAATATG TTCTCATTCT CTGGCTGATT CTGACTTCAC CTGTGTCTAA
  CTTGTTCTCT CTCTGCAACC TGTCTCTCTC TAACTGTCCC AGCAAAACTG CCTCCTCCTC
  CTCCTTTTTC TTTTCTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132265208	ENSMUSSNP3040647	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46183444					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60703577 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2996	CpG island 2996	1368 bp distal
Gm74448	predicted gene, 74448	within coordinates
Rr402613	regulatory region 402613	1285 bp downstream
Shmt1	serine hydroxymethyltransferase 1 (soluble)	1515 bp upstream
Tssr108309	transcription start site region 108309	1724 bp upstream
Tssr108310	transcription start site region 108310	1541 bp upstream
Tssr108311	transcription start site region 108311	1510 bp upstream
Tssr108312	transcription start site region 108312	1481 bp upstream