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rs46183638 SNP Detail
Summary
  • ID
    rs46183638
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr2:133391997 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCTCACCTTA GCTTGCCCCA
    GGACTGCCTG GCCACTGGAA ACCCCTTACA TATTTGTTAA CAGAGACGCT AAATAGGATA
    AATTCAGAGC TACTCCAGAG CTACTCTCGC CTTCTGAACT GGCAGATACT GAGAAAAACT
    TTGTTAATGG TAAGATCGAG CAAGTCCGCA AGCACTGTAC ATTTTCAGAG AAGACAGATA
    S
    TACCCCCTCA AAGTATTAAG TAACCACACA TTATTTGTTG TGGGTGGGAG GAGGCCACCA
    GCATAGAGTG TAAAAAGCAA TAAGTCTCTG TATTTGTTTC TTCTCTACAA TTTCAATTGC
    ATGAAAAATG GACTGAACAT GACCATCTAC ACTGTATTCC AAAGAACAGA GAATTCATTT
    AAACTGGATT CACTTCTAGG                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
MSM/Ms
ss147626644 ENSMUSSNP4523628 ENSEMBL ENSEMBL_Sanger f SNP G G C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
MSM/Ms
rs46183638 SNP G G C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:133391997 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12316 CpG island 12316 1777 bp proximal
Rr366783 regulatory region 366783 171 bp upstream
Rr565619 regulatory region 565619 121 bp proximal
Rr565620 regulatory region 565620 222 bp proximal
Rr565621 regulatory region 565621 1796 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory