rs46184822 SNP Detail

Summary

• ID
  rs46184822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:87956848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTTCAAT CCCCGTGCTC
  AAGGAGAGAG AGGATAGCTC GGGCCCACCT GGTTTCCATA GTGAGTTCCA GGCCAGCTAG
  GGCTATGTAT GCAAGGAGGG TCATGTGTTG ATGTCTGTGA GGATAAACGA GAGGACAGTG
  TGAGTATTCA TTATCTGAGG ATGAGTGGTA AGTGAATGTG TGGGGTATTT TGCCTACGTT
  Y
  AGTTAACAAT TTTTGTTTCA GCAAGGTACC TCTGGTACTA ATAGAGCTGT TCAGAGAATT
  GGTACCGTGG GACCAGTTTT TAGACACCCC CCCCAAAAAA AAAAAAACTG GTACACACGC
  ACTTAGGTGT GTTCAAAGCA CATATGTTAA TTTTGCCACT TTTGAATATT AACAGTAATG
  GTTTTTCTTT CAGGTTATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60290176	NES15780224	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46184822					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60290176	NES15780224	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:87956848 () rs orientation: forward

Symbol	Name	Function Class
Epcam	epithelial cell adhesion molecule	within coordinates
Tssr146205	transcription start site region 146205	1904 bp downstream
Tssr146206	transcription start site region 146206	1075 bp downstream
Tssr146207	transcription start site region 146207	1012 bp upstream
Tssr146208	transcription start site region 146208	1032 bp upstream
Tssr146209	transcription start site region 146209	1071 bp upstream
Tssr146210	transcription start site region 146210	1145 bp upstream
Tssr146211	transcription start site region 146211	1402 bp upstream