rs46185634 SNP Detail

Summary

• ID
  rs46185634
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91053602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATTAGTT TCTGGGGAGA
  GGGTGAGTTG GGAACTAGCT ACATCCCACC CACACAGTGA AAGAGACTGG GGATAAGGGG
  TGGGGGTGGG GACAAATAGA TGCAGTCGGA TGGCTTTCAT GGAAGGAGTG TGCATGTTCA
  CATCATTTTT TTGTAAGCAC CGAGGAGAGT AGAACAGCTG TTATTTAGGT TTCAGTGTTT
  S
  TAAACTGTAT GTACAACATT TTTGATGCTG GATTTCAATG TAATGTTGTG AGTAACCCTT
  GGACATTTTA TGTCTTCCTC GTAAGGCACA GTGCCTTGCT TAGCAATTGT TTTGTCATGC
  CTTTTCGTGT CTTGAAGTGG ACACATTTAT TTATTCATGT ATTTTTACAA ATAACAAAAA
  ATAAAAACGT CTGTTAAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198243	NES16702750	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46185634					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198243	NES16702750	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91053602 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Tssr47225	transcription start site region 47225	1932 bp downstream
Tssr47226	transcription start site region 47226	1863 bp downstream
Tssr47227	transcription start site region 47227	1669 bp downstream
Tssr47228	transcription start site region 47228	1606 bp downstream
Tssr47229	transcription start site region 47229	1585 bp downstream
Tssr47230	transcription start site region 47230	1560 bp downstream
Tssr47231	transcription start site region 47231	1530 bp downstream
Tssr47232	transcription start site region 47232	1383 bp downstream
Tssr47233	transcription start site region 47233	1333 bp downstream
Tssr47234	transcription start site region 47234	1298 bp downstream
Tssr47235	transcription start site region 47235	540 bp downstream
Tssr47236	transcription start site region 47236	501 bp downstream
Tssr47237	transcription start site region 47237	481 bp downstream
Tssr47238	transcription start site region 47238	422 bp downstream
Tssr47239	transcription start site region 47239	417 bp downstream
Tssr47240	transcription start site region 47240	398 bp downstream
Tssr47241	transcription start site region 47241	369 bp downstream
Tssr47242	transcription start site region 47242	344 bp downstream
Tssr47243	transcription start site region 47243	326 bp downstream
Tssr47244	transcription start site region 47244	287 bp downstream
Tssr47245	transcription start site region 47245	270 bp downstream
Tssr47246	transcription start site region 47246	216 bp downstream
Tssr47247	transcription start site region 47247	162 bp downstream
Tssr47248	transcription start site region 47248	103 bp downstream
Tssr47249	transcription start site region 47249	42 bp downstream
Tssr47250	transcription start site region 47250	87 bp upstream
Tssr47251	transcription start site region 47251	151 bp upstream
Tssr47252	transcription start site region 47252	203 bp upstream
Tssr51812	transcription start site region 51812	1516 bp upstream
Tssr51813	transcription start site region 51813	1499 bp upstream
Tssr51814	transcription start site region 51814	525 bp upstream
Tssr51815	transcription start site region 51815	479 bp upstream
Tssr51816	transcription start site region 51816	446 bp upstream